; ; "Nico ions": NaCl from (1) with scaling parameter for Na-O(H2O) from (2) ; ; (1) Weerasinghe S, Smith PE (2003) A kirkwood-buff derived force field for ; sodium chloride in water. J Chem Phys 119:11342–11349. ; (2) Berk Hess and Nico F. A. van der Vegt (2009) Cation specific binding ; with protein surface charges. PNAS 106:13296-13300 ; ; For use with OPLS ; [ moleculetype ] ; molname nrexcl NA 1 [ atoms ] ; id at type res nr residu name at name cg nr charge mass 1 nico_na 1 NA NA 1 1 22.98977 [ moleculetype ] ; molname nrexcl CL 1 [ atoms ] ; id at type res nr residu name at name cg nr charge mass 1 nico_cl 1 CL CL 1 -1 35.45300 [ atomtypes ] ; name bond_type mass charge ptype sigma epsilon nico_cl Cl- 17 35.45300 -1.000 A 4.40E-001 4.70E-001 nico_na Na+ 11 22.98977 1.000 A 2.45E-001 3.20E-001 [ nonbond_params ] ; i j func sigma(ij) epsilon(ij) nico_na opls_111 1 0.2778 0.3385 ; this scales Na+ to O(tip3p) epsilon by 0.75